Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KP79_PYT23655E3 ubiquitin-protein ligase UBR5. (3026 aa)    
Predicted Functional Partners:
KP79_PYT17221
Mitotic checkpoint protein BUB3.
    
 
 0.937
KP79_PYT20483
E3 ubiquitin-protein ligase TRIP12.
   
  
 0.922
KP79_PYT24415
Microspherule protein 1.
    
   0.816
KP79_PYT16847
Pre-mRNA-processing-splicing factor 8.
   
 
 0.813
KP79_PYT10442
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
   
  
 0.788
KP79_PYT07466
Zinc finger with UFM1-specific peptidase domain protein.
    
 
 0.759
KP79_PYT22859
Centrosomal protein of 78 kDa.
    
 
 0.756
KP79_PYT14557
ATM interactor.
    
 
 0.752
KP79_PYT18502
Transcription elongation factor SPT5.
    
 
 0.727
KP79_PYT10797
SNW domain-containing protein 1.
    
   0.714
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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