KP79_PYT22001 protein (Mizuhopecten yessoensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

KP79_PYT22001

Transmembrane protein 2. (1089 aa)

Predicted Functional Partners:

KP79_PYT19127

0.484

KP79_PYT11388

0.484

KP79_PYT11389

0.484

KP79_PYT03217

0.484

KP79_PYT01599

0.484

KP79_PYT01598

0.484

KP79_PYT12234

0.484

KP79_PYT12232

0.484

KP79_PYT08785

0.484

KP79_PYT16947

0.484

Your Current Organism:

Mizuhopecten yessoensis

NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KP79_PYT01598	KP79_PYT22001	A0A210Q920	A0A210PR53	Transforming growth factor-beta-induced protein ig-h3.	Transmembrane protein 2.	0.484
KP79_PYT01599	KP79_PYT22001	A0A210Q8Z3	A0A210PR53	Transforming growth factor-beta-induced protein ig-h3.	Transmembrane protein 2.	0.484
KP79_PYT03217	KP79_PYT22001	A0A210PIK8	A0A210PR53	Transforming growth factor-beta-induced protein ig-h3.	Transmembrane protein 2.	0.484
KP79_PYT08785	KP79_PYT22001	A0A210QGJ2	A0A210PR53	Transforming growth factor-beta-induced protein ig-h3.	Transmembrane protein 2.	0.484
KP79_PYT11388	KP79_PYT22001	A0A210PG87	A0A210PR53	Transforming growth factor-beta-induced protein ig-h3.	Transmembrane protein 2.	0.484
KP79_PYT11389	KP79_PYT22001	A0A210PG88	A0A210PR53	Transforming growth factor-beta-induced protein ig-h3.	Transmembrane protein 2.	0.484
KP79_PYT12232	KP79_PYT22001	A0A210QAI1	A0A210PR53	Transforming growth factor-beta-induced protein ig-h3.	Transmembrane protein 2.	0.484
KP79_PYT12234	KP79_PYT22001	A0A210QAF9	A0A210PR53	Transforming growth factor-beta-induced protein ig-h3.	Transmembrane protein 2.	0.484
KP79_PYT16947	KP79_PYT22001	A0A210QKJ2	A0A210PR53	Transforming growth factor-beta-induced protein ig-h3.	Transmembrane protein 2.	0.484
KP79_PYT19127	KP79_PYT22001	A0A210PF66	A0A210PR53	Transforming growth factor-beta-induced protein ig-h3.	Transmembrane protein 2.	0.484
KP79_PYT22001	KP79_PYT01598	A0A210PR53	A0A210Q920	Transmembrane protein 2.	Transforming growth factor-beta-induced protein ig-h3.	0.484
KP79_PYT22001	KP79_PYT01599	A0A210PR53	A0A210Q8Z3	Transmembrane protein 2.	Transforming growth factor-beta-induced protein ig-h3.	0.484
KP79_PYT22001	KP79_PYT03217	A0A210PR53	A0A210PIK8	Transmembrane protein 2.	Transforming growth factor-beta-induced protein ig-h3.	0.484
KP79_PYT22001	KP79_PYT08785	A0A210PR53	A0A210QGJ2	Transmembrane protein 2.	Transforming growth factor-beta-induced protein ig-h3.	0.484
KP79_PYT22001	KP79_PYT11388	A0A210PR53	A0A210PG87	Transmembrane protein 2.	Transforming growth factor-beta-induced protein ig-h3.	0.484
KP79_PYT22001	KP79_PYT11389	A0A210PR53	A0A210PG88	Transmembrane protein 2.	Transforming growth factor-beta-induced protein ig-h3.	0.484
KP79_PYT22001	KP79_PYT12232	A0A210PR53	A0A210QAI1	Transmembrane protein 2.	Transforming growth factor-beta-induced protein ig-h3.	0.484
KP79_PYT22001	KP79_PYT12234	A0A210PR53	A0A210QAF9	Transmembrane protein 2.	Transforming growth factor-beta-induced protein ig-h3.	0.484
KP79_PYT22001	KP79_PYT16947	A0A210PR53	A0A210QKJ2	Transmembrane protein 2.	Transforming growth factor-beta-induced protein ig-h3.	0.484
KP79_PYT22001	KP79_PYT19127	A0A210PR53	A0A210PF66	Transmembrane protein 2.	Transforming growth factor-beta-induced protein ig-h3.	0.484