Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KP79_PYT15131Regulator of nonsense transcripts 1. (1111 aa)    
Predicted Functional Partners:
KP79_PYT11739
Regulator of nonsense transcripts 2.
   
 0.999
KP79_PYT20440
Regulator of nonsense transcripts 3A.
    
 0.999
KP79_PYT06005
Serine/threonine-protein kinase SMG1; Belongs to the PI3/PI4-kinase family.
    
 0.998
KP79_PYT15572
Protein SMG5.
   
 0.998
KP79_PYT00535
Telomerase-binding protein EST1A.
   
 0.998
KP79_PYT02245
Protein SMG7.
   
 0.997
KP79_PYT24426
Protein CASC3.
    
 0.992
KP79_PYT24065
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
   
 0.992
KP79_PYT14782
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
    
 0.989
KP79_PYT05248
Eukaryotic peptide chain release factor GTP-binding subunit ERF3A.
    
 0.985
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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