Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KP79_PYT08105LMBR1 domain-containing protein 2. (747 aa)    
Predicted Functional Partners:
KP79_PYT08358
PITH domain-containing protein.
      
 0.810
KP79_PYT17684
Protein FRA10AC1-like.
      
 0.805
KP79_PYT04606
Ubiquitin-associated domain-containing protein 1.
      
 0.789
KP79_PYT15120
GPI ethanolamine phosphate transferase 3.
      
 0.710
KP79_PYT23277
AP-4 complex subunit epsilon-1.
   
  
 0.690
KP79_PYT09364
ESF1-like.
      
 0.669
KP79_PYT11880
Transmembrane protein 115.
      
 0.618
KP79_PYT09030
Coiled-coil domain-containing protein 25.
      
 0.562
KP79_PYT23620
Protein FAM8A1.
      
 0.558
KP79_PYT02293
SPRY domain-containing protein 7.
      
 0.537
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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