Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
KP79_PYT07158Lactation elevated protein 1. (487 aa)    
Predicted Functional Partners:
KP79_PYT16338
Protein GUCD1.
      
 0.711
KP79_PYT06702
Translocation protein SEC63-like.
      
 0.670
KP79_PYT06821
28S ribosomal protein S9, mitochondrial.
  
   0.589
KP79_PYT19730
NMDA receptor-regulated protein 2.
      
 0.566
KP79_PYT15851
Breast carcinoma-amplified sequence 3-like.
      
 0.563
KP79_PYT11382
Muskelin.
      
 0.514
KP79_PYT23405
Pumilio-like 2.
    
   0.487
KP79_PYT14670
28S ribosomal protein S16, mitochondrial.
   
   0.482
FEN1
Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]
    
   0.475
KP79_PYT14274
Group XV phospholipase A2.
    
   0.475
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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