Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KP79_PYT07173General transcription factor IIE subunit 1. (422 aa)    
Predicted Functional Partners:
KP79_PYT08154
Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.
   
 0.999
KP79_PYT18630
General transcription factor IIH subunit 1.
   
 0.993
KP79_PYT09243
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
    
 0.992
KP79_PYT21427
General transcription factor IIH subunit.
   
 0.991
KP79_PYT09966
CDK-activating kinase assembly factor MAT1.
    
 0.988
KP79_PYT03585
General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
   
 0.988
KP79_PYT19532
TFIIH basal transcription factor complex helicase XPB subunit.
   
 0.986
KP79_PYT04211
Transcription initiation factor IIB.
    
 0.983
KP79_PYT20614
General transcription factor IIF subunit 2.
   
 0.980
KP79_PYT23079
Transcription initiation factor IIA subunit 2.
    
 0.977
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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