Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KP79_PYT20295Dynein assembly factor with WDR repeat domains 1. (415 aa)    
Predicted Functional Partners:
KP79_PYT23705
U4/U6 small nuclear ribonucleoprotein Prp3.
   
 0.886
KP79_PYT05212
U4/U6 small nuclear ribonucleoprotein Prp31.
   
 0.811
KP79_PYT21097
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
 0.762
KP79_PYT16847
Pre-mRNA-processing-splicing factor 8.
   
 0.757
KP79_PYT17302
U5 small nuclear ribonucleoprotein helicase.
   
 0.756
KP79_PYT11196
IQ and AAA domain-containing protein 1.
   
  
 0.736
KP79_PYT22143
Intraflagellar transport protein 46-like.
      
 0.731
KP79_PYT16459
Small nuclear ribonucleoprotein Sm D3.
   
  0.725
KP79_PYT01237
U4/U6.U5 tri-snRNP-associated protein 1.
   
 0.724
KP79_PYT10088
Small nuclear ribonucleoprotein Sm D2.
   
 0.709
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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