Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KP79_PYT03684TNF receptor-associated factor 2. (585 aa)    
Predicted Functional Partners:
KP79_PYT05556
Serine/threonine-protein kinase/endoribonuclease ire-1.
    
 0.945
KP79_PYT21541
Mitofusin-2; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.
    
 0.903
KP79_PYT06490
Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family.
     
 0.901
KP79_PYT22471
Mitochondrial import receptor subunit TOM70.
    
 0.901
KP79_PYT15348
Peptidylprolyl isomerase.
     
  0.900
KP79_PYT07049
Tumor necrosis factor alpha-induced protein 3.
   
 0.881
KP79_PYT11303
Ubiquitin carboxyl-terminal hydrolase 48; Belongs to the peptidase C19 family.
    
 0.836
KP79_PYT19890
Mitogen-activated protein kinase kinase kinase 14.
    
 0.825
KP79_PYT06276
Inhibitor of nuclear factor kappa-B kinase subunit alpha.
    
 0.817
KP79_PYT14339
Ubiquitin carboxyl-terminal hydrolase CYLD.
    
 0.807
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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