Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KP79_PYT03700Collagen alpha-4(VI) chain. (747 aa)    
Predicted Functional Partners:
KP79_PYT06748
Adenylate kinase domain-containing protein 1.
    
   0.781
KP79_PYT25912
Leucine-rich repeat serine/threonine-protein kinase 1.
   
 0.766
KP79_PYT08829
Serine/threonine-protein kinase pats1.
   
 0.766
KP79_PYT23756
Cyclic GMP-binding protein C.
   
 0.766
KP79_PYT02164
Cyclic GMP-binding protein C.
   
 0.766
KP79_PYT16396
Serine/threonine-protein kinase pats1.
   
 0.766
KP79_PYT22251
Serine/threonine-protein kinase roco5.
   
 0.766
KP79_PYT06185
Leucine-rich repeat serine/threonine-protein kinase 1.
   
 0.766
KP79_PYT08861
Histone H2A deubiquitinase MYSM1.
    
 0.712
KP79_PYT11392
Leucine-rich repeat and guanylate kinase domain-containing protein.
    
 0.622
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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