Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KP79_PYT03947LIM domain transcription factor LMO4-B. (201 aa)    
Predicted Functional Partners:
KP79_PYT17403
LIM domain-binding protein 2.
   
 0.909
KP79_PYT23798
DNA endonuclease RBBP8.
    
 
 0.860
KP79_PYT00830
Isopentenyl-diphosphate Delta-isomerase 1.
    
   0.795
KP79_PYT09129
Single-stranded DNA-binding protein 3.
    
 
 0.727
KP79_PYT15457
Insulin gene enhancer protein isl-1.
    
   0.717
KP79_PYT19729
Breast cancer type 1 susceptibility protein-like.
    
 
 0.606
KP79_PYT08603
Grainyhead-like protein 2-like.
    
 
 0.582
KP79_PYT18667
Rhombotin-1.
    
   0.572
KP79_PYT22635
Mothers against decapentaplegic homolog.
    
   0.564
KP79_PYT24243
Thioredoxin domain-containing protein 3-like; Belongs to the NDK family.
    
   0.500
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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