Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KP79_PYT03954Uncharacterized protein. (313 aa)    
Predicted Functional Partners:
KP79_PYT02698
RBR-type E3 ubiquitin transferase.
  
 
  0.617
KP79_PYT23020
RBR-type E3 ubiquitin transferase.
  
 
  0.617
KP79_PYT06025
AN1-type zinc finger protein 4.
    
 0.541
KP79_PYT14056
RBR-type E3 ubiquitin transferase.
  
     0.532
KP79_PYT23021
E3 ubiquitin-protein ligase RNF19A.
  
     0.530
KP79_PYT14060
RBR-type E3 ubiquitin transferase.
  
     0.525
KP79_PYT15701
Ubiquitin-conjugating enzyme E2 L3; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.521
KP79_PYT00958
RBR-type E3 ubiquitin transferase.
  
     0.518
KP79_PYT03955
Ubiquitin-60S ribosomal protein L40.
    
  0.480
KP79_PYT20483
E3 ubiquitin-protein ligase TRIP12.
   
 
 0.452
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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