Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KP79_PYT13570Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family. (183 aa)    
Predicted Functional Partners:
KP79_PYT07878
39S ribosomal protein L19, mitochondrial.
  
 
 0.992
KP79_PYT14670
28S ribosomal protein S16, mitochondrial.
  
 
 0.992
KP79_PYT01960
39S ribosomal protein L21, mitochondrial.
  
 
 0.990
KP79_PYT00032
40S ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family.
  
 
 0.990
KP79_PYT05856
39S ribosomal protein L12, mitochondrial.
  
 
 0.989
KP79_PYT07133
28S ribosomal protein S6, mitochondrial.
   
 
 0.988
KP79_PYT14635
30S ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family.
  
 
 0.987
KP79_PYT10414
39S ribosomal protein L11, mitochondrial; Belongs to the universal ribosomal protein uL11 family.
  
 
 0.987
KP79_PYT11010
39S ribosomal protein L2, mitochondrial.
  
 
 0.987
KP79_PYT03933
39S ribosomal protein L32, mitochondrial.
  
 
 0.986
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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