Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KP79_PYT23277AP-4 complex subunit epsilon-1. (997 aa)    
Predicted Functional Partners:
KP79_PYT10069
AP-4 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.
  
 0.991
KP79_PYT10578
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.
   
 0.987
KP79_PYT08938
Cyclin-G-associated kinase.
   
 0.983
KP79_PYT16373
AP complex subunit beta.
   
 0.953
KP79_PYT05819
AP-4 complex accessory subunit tepsin.
   
 
 0.951
KP79_PYT09267
AP-1 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.
   
 0.902
KP79_PYT20931
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.
   
 0.885
KP79_PYT00946
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.
   
 0.838
KP79_PYT10641
UPF0552 protein C15orf38-like.
    
 0.832
KP79_PYT15584
AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family.
   
 0.827
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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