Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KP79_PYT19703Nucleolar MIF4G domain-containing protein 1. (901 aa)    
Predicted Functional Partners:
KP79_PYT01838
WD repeat-containing protein 3.
   
 
 0.972
KP79_PYT07218
RNA helicase.
   
 
 0.967
KP79_PYT09364
ESF1-like.
   
 
 0.967
KP79_PYT13990
Neuroguidin.
   
 
 0.963
KP79_PYT18405
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 
 0.962
KP79_PYT18744
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.
   
   0.949
KP79_PYT09237
Something about silencing protein 10.
   
 
 0.943
KP79_PYT10413
Ribosomal RNA processing protein 36-like.
   
 
 0.940
KP79_PYT16121
Nucleolar complex protein 4-like B.
   
   0.940
KP79_PYT11091
U3 small nucleolar RNA-interacting protein 2.
   
 
 0.936
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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