Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KP79_PYT16781Nuclear pore complex protein Nup88. (586 aa)    
Predicted Functional Partners:
KP79_PYT13267
Nuclear pore complex protein Nup98-Nup96.
   
 0.999
KP79_PYT21519
Uncharacterized protein.
   
 0.998
KP79_PYT00438
S-antigen protein.
   
 0.998
KP79_PYT08549
Nuclear pore complex protein Nup155.
   
 0.997
KP79_PYT05241
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
   
 0.997
KP79_PYT04569
Nuclear pore complex protein Nup214.
   
 0.997
KP79_PYT14137
Nuclear pore protein.
   
 0.996
KP79_PYT11014
Uncharacterized protein.
   
 0.996
KP79_PYT13430
Nucleoporin SEH1; Belongs to the WD repeat SEC13 family.
   
 0.996
KP79_PYT09027
Nuclear pore complex protein Nup153.
   
 0.995
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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