STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KP79_PYT17339Omega-amidase NIT2-B. (281 aa)    
Predicted Functional Partners:
KP79_PYT05766
Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
 
 0.952
KP79_PYT13465
Aspartate aminotransferase.
   
 0.919
KP79_PYT14940
D-aspartate oxidase.
   
 
 0.914
KP79_PYT13746
D-aspartate oxidase.
   
 
 0.914
KP79_PYT13748
D-aspartate oxidase.
   
 
 0.914
KP79_PYT13747
D-aspartate oxidase.
   
 
 0.914
KP79_PYT17545
Aspartate aminotransferase.
   
 0.912
KP79_PYT17984
Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family.
  
 
  0.841
KP79_PYT24069
Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family.
  
 
  0.841
KP79_PYT00534
Malate dehydrogenase.
  
 
 0.827
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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