KP79_PYT19214 protein (Mizuhopecten yessoensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

KP79_PYT19214

Male-specific lethal 1-like 1. (446 aa)

Predicted Functional Partners:

KP79_PYT12225

0.999

KP79_PYT04210

0.935

KP79_PYT10719

0.914

KP79_PYT05948

0.914

KP79_PYT02248

0.889

KP79_PYT16931

0.821

KP79_PYT06478

0.821

KP79_PYT14465

0.737

KP79_PYT15289

0.671

KP79_PYT03904

0.656

Your Current Organism:

Mizuhopecten yessoensis

NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KP79_PYT02248	KP79_PYT04210	A0A210PW71	A0A210Q4Q7	Non-specific serine/threonine protein kinase.	ATP-dependent RNA helicase A-like protein.	0.470
KP79_PYT02248	KP79_PYT12225	A0A210PW71	A0A210QAG4	Non-specific serine/threonine protein kinase.	Male-specific lethal 3-like.	0.963
KP79_PYT02248	KP79_PYT15289	A0A210PW71	A0A210QZ99	Non-specific serine/threonine protein kinase.	Mortality factor 4-like protein 1.	0.481
KP79_PYT02248	KP79_PYT19214	A0A210PW71	A0A210PW41	Non-specific serine/threonine protein kinase.	Male-specific lethal 1-like 1.	0.889
KP79_PYT03904	KP79_PYT05948	A0A210PFV7	A0A210QA81	KAT8 regulatory NSL complex subunit 2.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.909
KP79_PYT03904	KP79_PYT06478	A0A210PFV7	A0A210QS87	KAT8 regulatory NSL complex subunit 2.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.812
KP79_PYT03904	KP79_PYT10719	A0A210PFV7	A0A210PPH8	KAT8 regulatory NSL complex subunit 2.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.909
KP79_PYT03904	KP79_PYT12225	A0A210PFV7	A0A210QAG4	KAT8 regulatory NSL complex subunit 2.	Male-specific lethal 3-like.	0.664
KP79_PYT03904	KP79_PYT15289	A0A210PFV7	A0A210QZ99	KAT8 regulatory NSL complex subunit 2.	Mortality factor 4-like protein 1.	0.583
KP79_PYT03904	KP79_PYT16931	A0A210PFV7	A0A210QKI8	KAT8 regulatory NSL complex subunit 2.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.812
KP79_PYT03904	KP79_PYT19214	A0A210PFV7	A0A210PW41	KAT8 regulatory NSL complex subunit 2.	Male-specific lethal 1-like 1.	0.656
KP79_PYT04210	KP79_PYT02248	A0A210Q4Q7	A0A210PW71	ATP-dependent RNA helicase A-like protein.	Non-specific serine/threonine protein kinase.	0.470
KP79_PYT04210	KP79_PYT05948	A0A210Q4Q7	A0A210QA81	ATP-dependent RNA helicase A-like protein.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.526
KP79_PYT04210	KP79_PYT06478	A0A210Q4Q7	A0A210QS87	ATP-dependent RNA helicase A-like protein.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.526
KP79_PYT04210	KP79_PYT10719	A0A210Q4Q7	A0A210PPH8	ATP-dependent RNA helicase A-like protein.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.526
KP79_PYT04210	KP79_PYT12225	A0A210Q4Q7	A0A210QAG4	ATP-dependent RNA helicase A-like protein.	Male-specific lethal 3-like.	0.945
KP79_PYT04210	KP79_PYT14465	A0A210Q4Q7	A0A210QHF4	ATP-dependent RNA helicase A-like protein.	Polyadenylate-binding protein 2.	0.953
KP79_PYT04210	KP79_PYT15289	A0A210Q4Q7	A0A210QZ99	ATP-dependent RNA helicase A-like protein.	Mortality factor 4-like protein 1.	0.710
KP79_PYT04210	KP79_PYT16931	A0A210Q4Q7	A0A210QKI8	ATP-dependent RNA helicase A-like protein.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.526
KP79_PYT04210	KP79_PYT19214	A0A210Q4Q7	A0A210PW41	ATP-dependent RNA helicase A-like protein.	Male-specific lethal 1-like 1.	0.935