STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KP79_PYT04940Uncharacterized protein C18H10.09. (795 aa)    
Predicted Functional Partners:
KP79_PYT15538
DNA polymerase iota.
    
 0.724
KP79_PYT13100
Replication factor C subunit 3.
   
 
  0.561
KP79_PYT21244
Tumor protein 63.
    
 
 0.559
KP79_PYT14741
DNA polymerase kappa.
    
 0.475
KP79_PYT15206
DNA repair protein REV1.
    
 0.475
KP79_PYT09651
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
 0.460
KP79_PYT06025
AN1-type zinc finger protein 4.
    
 0.450
KP79_PYT11216
Ubiquitin-like protein 4A-A.
    
 0.450
KP79_PYT08391
UV excision repair protein RAD23-like B.
    
 0.412
KP79_PYT14857
Ubiquitin-like protein 7.
    
 0.400
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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