Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KP79_PYT13360Pachytene checkpoint protein 2-like; Belongs to the AAA ATPase family. (434 aa)    
Predicted Functional Partners:
KP79_PYT06052
Mitotic spindle assembly checkpoint protein MAD2A.
   
 
 0.961
KP79_PYT18300
HORMA domain-containing protein 1.
   
 
 0.945
KP79_PYT06433
Meiotic recombination protein DMC1/LIM15-like; Belongs to the RecA family.
  
 0.919
KP79_PYT11974
Ubiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.825
KP79_PYT20598
E3 ubiquitin-protein ligase.
      
 0.824
KP79_PYT21215
Mitotic spindle assembly checkpoint protein MAD2B.
    
 
 0.824
KP79_PYT06077
Non-specific serine/threonine protein kinase.
   
 
 0.818
KP79_PYT15079
Calcium and integrin-binding protein 1.
    
 
 0.817
KP79_PYT16431
Cell cycle checkpoint protein RAD1.
    
   0.813
KP79_PYT05428
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
  
 
 0.800
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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