Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KP79_PYT19619Ras-related protein Rab-18-B. (206 aa)    
Predicted Functional Partners:
KP79_PYT10600
Rab3 GTPase-activating protein non-catalytic subunit.
     
 0.922
KP79_PYT17561
Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.
   
 0.910
KP79_PYT13228
Rab proteins geranylgeranyltransferase component A 2.
     
 0.871
KP79_PYT17509
Syntaxin-18.
   
  
 0.816
KP79_PYT00809
RAD50-interacting protein 1.
    
 
 0.759
KP79_PYT13686
TBC1 domain family member 20.
      
 0.748
KP79_PYT04066
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
     
 0.726
KP79_PYT22565
TBC1 domain family member 23.
      
 0.703
KP79_PYT18015
Sorting nexin-14.
      
 0.681
KP79_PYT03768
ATP-dependent zinc metalloprotease YME1L1; Belongs to the AAA ATPase family.
   
  
 0.679
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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