Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KP79_PYT19620Kinetochore protein Spc25. (298 aa)    
Predicted Functional Partners:
KP79_PYT06357
Kinetochore protein Nuf2-B.
   
 0.999
KP79_PYT06435
Kinetochore protein Spc24.
   
 0.998
KP79_PYT17831
Protein MIS12-like.
    
 0.987
KP79_PYT03942
Uncharacterized protein.
   
 0.962
KP79_PYT15262
Uncharacterized protein.
   
 0.956
KP79_PYT14760
Polyamine-modulated factor 1.
   
  0.943
KP79_PYT06052
Mitotic spindle assembly checkpoint protein MAD2A.
   
 
 0.934
KP79_PYT18296
Uncharacterized protein.
   
 0.921
KP79_PYT08547
Disks large-associated protein 5.
   
  
 0.909
KP79_PYT17085
Condensin complex subunit 3.
   
  
 0.907
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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