Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KP79_PYT15984Uncharacterized protein. (1249 aa)    
Predicted Functional Partners:
KP79_PYT20779
Eukaryotic initiation factor 4A-I; Belongs to the DEAD box helicase family.
    
 0.473
KP79_PYT11570
Small nuclear ribonucleoprotein F.
    
 0.458
KP79_PYT19526
Splicing factor 3B subunit 1.
   
 0.437
KP79_PYT08861
Histone H2A deubiquitinase MYSM1.
   
 0.435
KP79_PYT04188
Poly(RC)-binding protein 3.
    
 0.422
KP79_PYT07483
U7 snRNA-associated Sm-like protein LSm10.
    
 0.419
KP79_PYT21135
Splicing factor 3B subunit 4.
    
 0.416
KP79_PYT14977
Nuclear cap-binding protein subunit 1.
    
 0.409
KP79_PYT14978
Nuclear cap-binding protein subunit 1.
    
 0.409
KP79_PYT10415
Splicing factor 3B subunit 2.
    
 0.402
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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