Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KP79_PYT02229Acyl--CoA ligase YdaB. (552 aa)    
Predicted Functional Partners:
KP79_PYT18183
Polyketide synthase 16.
  
 0.736
KP79_PYT06100
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 0.489
KP79_PYT06434
Long-chain-fatty-acid--CoA ligase 1.
 
 
 0.413
KP79_PYT12387
Acyl-CoA synthetase family member 4.
  
 
 0.412
KP79_PYT20492
Long-chain-fatty-acid--CoA ligase 4.
 
 
 0.409
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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