Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KP79_PYT21053Beta,beta-carotene 9',10'-oxygenase. (371 aa)    
Predicted Functional Partners:
KP79_PYT21443
Retinoid isomerohydrolase.
 
     0.949
KP79_PYT11479
Ras-like GTP-binding protein RHO.
     
 0.495
KP79_PYT13592
Actin-binding protein anillin.
   
 
 0.495
KP79_PYT08306
Nuclear factor interleukin-3-regulated protein.
   
  
 0.485
KP79_PYT18742
Membrane-associated protein Hem.
     
  0.466
KP79_PYT03665
Abl interactor 1.
   
 
  0.459
KP79_PYT09391
Rho GTPase-activating protein 11A.
   
 
 0.455
KP79_PYT15016
Ras GTPase-activating-like protein IQGAP1.
   
 
  0.443
KP79_PYT20813
Rho guanine nucleotide exchange factor 7.
     
  0.441
KP79_PYT14485
Partitioning defective 6-like gamma.
     
 0.433
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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