Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KP79_PYT04785Charged multivesicular body protein 5. (220 aa)    
Predicted Functional Partners:
KP79_PYT07246
Vacuolar protein sorting-associated protein VTA1-like.
   
 0.998
KP79_PYT07871
Charged multivesicular body protein 2a.
   
 0.995
KP79_PYT17178
Charged multivesicular body protein 3.
   
 0.992
KP79_PYT14366
Vacuolar protein sorting-associated protein 4B; Belongs to the AAA ATPase family.
   
 0.989
KP79_PYT14501
Vacuolar protein sorting-associated protein 4A; Belongs to the AAA ATPase family.
   
 0.989
KP79_PYT20920
Vacuolar protein sorting-associated protein 4; Belongs to the AAA ATPase family.
   
 0.989
KP79_PYT07699
Charged multivesicular body protein 1b.
   
 
 0.987
KP79_PYT07277
IST1-like.
   
 
 0.986
KP79_PYT00182
Charged multivesicular body protein 2b.
   
 0.976
KP79_PYT05222
Charged multivesicular body protein 6.
   
 0.957
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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