Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KP79_PYT13467F-box/LRR-repeat protein 8. (400 aa)    
Predicted Functional Partners:
KP79_PYT05021
Cullin-1; Belongs to the cullin family.
    
 0.962
KP79_PYT24812
S-phase kinase-associated protein 1.
    
 0.754
KP79_PYT18317
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.754
KP79_PYT20805
Cullin-3-A; Belongs to the cullin family.
    
 0.703
KP79_PYT19134
Hydrolase PNKD.
      
 0.640
KP79_PYT09244
F-box only protein 4.
      
 0.622
KP79_PYT16370
F-box/WD repeat-containing protein 8.
     
 0.611
KP79_PYT11312
F-box/LRR-repeat protein 13.
     
 0.562
KP79_PYT23810
Cullin-associated NEDD8-dissociated protein 1.
    
 0.548
KP79_PYT13464
Engulfment and cell motility protein 1.
      
 0.500
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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