Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KP79_PYT13465Aspartate aminotransferase. (426 aa)    
Predicted Functional Partners:
KP79_PYT00534
Malate dehydrogenase.
   
 0.999
KP79_PYT19094
RING-type domain-containing protein.
   
 0.990
KP79_PYT19632
Citrate synthase; Belongs to the citrate synthase family.
   
 0.988
KP79_PYT05766
Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 0.988
KP79_PYT17545
Aspartate aminotransferase.
  
 
0.987
KP79_PYT10809
Fumarate hydratase, mitochondrial.
   
 0.984
KP79_PYT11575
Alanine aminotransferase 2.
   
 
 0.978
KP79_PYT13719
Alanine aminotransferase 2.
   
 
 0.978
KP79_PYT16203
4-hydroxyphenylpyruvate dioxygenase.
  
 
 0.972
KP79_PYT23496
Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).
   
 
 0.972
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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