KP79_PYT07201 protein (Mizuhopecten yessoensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KP79_PYT07201

Tyrosine-protein phosphatase 10D. (1683 aa)

Predicted Functional Partners:

KP79_PYT11858

0.691

KP79_PYT11860

0.691

KP79_PYT11859

0.691

KP79_PYT08913

0.691

KP79_PYT12918

0.452

KP79_PYT25912

0.421

KP79_PYT08829

0.421

KP79_PYT23756

0.421

KP79_PYT02164

0.421

KP79_PYT16396

0.421

Your Current Organism:

Mizuhopecten yessoensis

NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KP79_PYT02164	KP79_PYT07201	A0A210PYR7	A0A210Q268	Cyclic GMP-binding protein C.	Tyrosine-protein phosphatase 10D.	0.421
KP79_PYT02164	KP79_PYT08829	A0A210PYR7	A0A210PNU6	Cyclic GMP-binding protein C.	Serine/threonine-protein kinase pats1.	0.952
KP79_PYT02164	KP79_PYT08913	A0A210PYR7	A0A210R3Z4	Cyclic GMP-binding protein C.	Fibroblast growth factor receptor 2.	0.768
KP79_PYT02164	KP79_PYT11858	A0A210PYR7	A0A210PYJ0	Cyclic GMP-binding protein C.	Tyrosine-protein kinase transforming protein SEA.	0.768
KP79_PYT02164	KP79_PYT11859	A0A210PYR7	A0A210PYJ5	Cyclic GMP-binding protein C.	Hepatocyte growth factor receptor.	0.768
KP79_PYT02164	KP79_PYT11860	A0A210PYR7	A0A210PYJ1	Cyclic GMP-binding protein C.	Hepatocyte growth factor receptor.	0.768
KP79_PYT02164	KP79_PYT16396	A0A210PYR7	A0A210Q0H5	Cyclic GMP-binding protein C.	Serine/threonine-protein kinase pats1.	0.952
KP79_PYT02164	KP79_PYT23756	A0A210PYR7	A0A210PWZ3	Cyclic GMP-binding protein C.	Cyclic GMP-binding protein C.	0.952
KP79_PYT02164	KP79_PYT25912	A0A210PYR7	A0A210PKM0	Cyclic GMP-binding protein C.	Leucine-rich repeat serine/threonine-protein kinase 1.	0.952
KP79_PYT07201	KP79_PYT02164	A0A210Q268	A0A210PYR7	Tyrosine-protein phosphatase 10D.	Cyclic GMP-binding protein C.	0.421
KP79_PYT07201	KP79_PYT08829	A0A210Q268	A0A210PNU6	Tyrosine-protein phosphatase 10D.	Serine/threonine-protein kinase pats1.	0.421
KP79_PYT07201	KP79_PYT08913	A0A210Q268	A0A210R3Z4	Tyrosine-protein phosphatase 10D.	Fibroblast growth factor receptor 2.	0.691
KP79_PYT07201	KP79_PYT11858	A0A210Q268	A0A210PYJ0	Tyrosine-protein phosphatase 10D.	Tyrosine-protein kinase transforming protein SEA.	0.691
KP79_PYT07201	KP79_PYT11859	A0A210Q268	A0A210PYJ5	Tyrosine-protein phosphatase 10D.	Hepatocyte growth factor receptor.	0.691
KP79_PYT07201	KP79_PYT11860	A0A210Q268	A0A210PYJ1	Tyrosine-protein phosphatase 10D.	Hepatocyte growth factor receptor.	0.691
KP79_PYT07201	KP79_PYT12918	A0A210Q268	A0A210QW23	Tyrosine-protein phosphatase 10D.	Vascular endothelial growth factor receptor 1.	0.452
KP79_PYT07201	KP79_PYT16396	A0A210Q268	A0A210Q0H5	Tyrosine-protein phosphatase 10D.	Serine/threonine-protein kinase pats1.	0.421
KP79_PYT07201	KP79_PYT23756	A0A210Q268	A0A210PWZ3	Tyrosine-protein phosphatase 10D.	Cyclic GMP-binding protein C.	0.421
KP79_PYT07201	KP79_PYT25912	A0A210Q268	A0A210PKM0	Tyrosine-protein phosphatase 10D.	Leucine-rich repeat serine/threonine-protein kinase 1.	0.421
KP79_PYT08829	KP79_PYT02164	A0A210PNU6	A0A210PYR7	Serine/threonine-protein kinase pats1.	Cyclic GMP-binding protein C.	0.952