STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KP79_PYT10066BRCA1-A complex subunit BRE. (377 aa)    
Predicted Functional Partners:
KP79_PYT08800
BRISC and BRCA1-A complex member 1.
    
 0.999
KP79_PYT24528
Lys-63-specific deubiquitinase BRCC36.
    
 0.998
KP79_PYT16920
BRISC complex subunit Abro1.
    
 0.987
KP79_PYT19729
Breast cancer type 1 susceptibility protein-like.
    
 0.906
KP79_PYT14526
Ankyrin repeat domain-containing protein 12.
   
 0.774
KP79_PYT09650
E3 ubiquitin-protein ligase RNF8.
    
 0.600
KP79_PYT06161
SUMO-conjugating enzyme UBC9-B; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.599
KP79_PYT16840
Nibrin.
    
 0.595
KP79_PYT05428
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
    
 0.582
KP79_PYT15545
Tumor suppressor p53-binding protein 1.
    
 0.577
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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