STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KP79_PYT22331Cystathionine beta-synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. (535 aa)    
Predicted Functional Partners:
KP79_PYT08038
Cystathionine gamma-lyase.
 0.998
KP79_PYT14445
Adenosylhomocysteinase.
  
 0.981
KP79_PYT11169
Adenosylhomocysteinase.
  
 0.981
KP79_PYT13628
Cystathionine gamma-synthase.
 0.969
KP79_PYT09892
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
 0.958
KP79_PYT04662
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
  
 
 0.946
KP79_PYT05857
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
  
 
 0.946
KP79_PYT08513
L-threonine dehydratase catabolic TdcB.
    
0.937
KP79_PYT16094
Serine racemase.
    
 0.937
KP79_PYT16039
L-serine dehydratase/L-threonine deaminase.
    
 0.937
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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