KP79_PYT01579 protein (Mizuhopecten yessoensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KP79_PYT01579

Ras-specific guanine nucleotide-releasing factor 1. (93 aa)

Predicted Functional Partners:

KP79_PYT05683

0.723

KP79_PYT05682

0.723

KP79_PYT05681

0.723

KP79_PYT24484

0.719

KP79_PYT21223

0.688

KP79_PYT08604

0.664

KP79_PYT14820

0.650

KP79_PYT18273

0.650

KP79_PYT07785

0.594

KP79_PYT11479

0.570

Your Current Organism:

Mizuhopecten yessoensis

NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KP79_PYT01579	KP79_PYT05681	A0A210Q962	A0A210QFX6	Ras-specific guanine nucleotide-releasing factor 1.	Growth factor receptor-bound protein 2.	0.723
KP79_PYT01579	KP79_PYT05682	A0A210Q962	A0A210QFV0	Ras-specific guanine nucleotide-releasing factor 1.	Growth factor receptor-bound protein 2.	0.723
KP79_PYT01579	KP79_PYT05683	A0A210Q962	A0A210QFR8	Ras-specific guanine nucleotide-releasing factor 1.	Growth factor receptor-bound protein 2.	0.723
KP79_PYT01579	KP79_PYT07785	A0A210Q962	A0A210PY00	Ras-specific guanine nucleotide-releasing factor 1.	GRB2-related adapter protein 2.	0.594
KP79_PYT01579	KP79_PYT08604	A0A210Q962	A0A210R109	Ras-specific guanine nucleotide-releasing factor 1.	Focal adhesion kinase 1; Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.664
KP79_PYT01579	KP79_PYT11479	A0A210Q962	A0A210PE14	Ras-specific guanine nucleotide-releasing factor 1.	Ras-like GTP-binding protein RHO.	0.570
KP79_PYT01579	KP79_PYT14820	A0A210Q962	A0A210Q351	Ras-specific guanine nucleotide-releasing factor 1.	SHC-transforming protein 1.	0.650
KP79_PYT01579	KP79_PYT18273	A0A210Q962	A0A210QPD3	Ras-specific guanine nucleotide-releasing factor 1.	Adapter molecule Crk.	0.650
KP79_PYT01579	KP79_PYT21223	A0A210Q962	A0A210QDA4	Ras-specific guanine nucleotide-releasing factor 1.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.688
KP79_PYT01579	KP79_PYT24484	A0A210Q962	A0A210PFX9	Ras-specific guanine nucleotide-releasing factor 1.	Receptor protein-tyrosine kinase.	0.719
KP79_PYT05681	KP79_PYT01579	A0A210QFX6	A0A210Q962	Growth factor receptor-bound protein 2.	Ras-specific guanine nucleotide-releasing factor 1.	0.723
KP79_PYT05681	KP79_PYT05682	A0A210QFX6	A0A210QFV0	Growth factor receptor-bound protein 2.	Growth factor receptor-bound protein 2.	0.901
KP79_PYT05681	KP79_PYT05683	A0A210QFX6	A0A210QFR8	Growth factor receptor-bound protein 2.	Growth factor receptor-bound protein 2.	0.906
KP79_PYT05681	KP79_PYT08604	A0A210QFX6	A0A210R109	Growth factor receptor-bound protein 2.	Focal adhesion kinase 1; Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.842
KP79_PYT05681	KP79_PYT14820	A0A210QFX6	A0A210Q351	Growth factor receptor-bound protein 2.	SHC-transforming protein 1.	0.897
KP79_PYT05681	KP79_PYT18273	A0A210QFX6	A0A210QPD3	Growth factor receptor-bound protein 2.	Adapter molecule Crk.	0.729
KP79_PYT05681	KP79_PYT21223	A0A210QFX6	A0A210QDA4	Growth factor receptor-bound protein 2.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.899
KP79_PYT05681	KP79_PYT24484	A0A210QFX6	A0A210PFX9	Growth factor receptor-bound protein 2.	Receptor protein-tyrosine kinase.	0.989
KP79_PYT05682	KP79_PYT01579	A0A210QFV0	A0A210Q962	Growth factor receptor-bound protein 2.	Ras-specific guanine nucleotide-releasing factor 1.	0.723
KP79_PYT05682	KP79_PYT05681	A0A210QFV0	A0A210QFX6	Growth factor receptor-bound protein 2.	Growth factor receptor-bound protein 2.	0.901