STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KP79_PYT24426Protein CASC3. (1161 aa)    
Predicted Functional Partners:
KP79_PYT14782
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
   
 0.999
KP79_PYT00076
Protein mago nashi-like 2.
    
 0.987
KP79_PYT15131
Regulator of nonsense transcripts 1.
    
 0.973
KP79_PYT06027
Eukaryotic initiation factor 4A-III.
    
 0.961
KP79_PYT06026
Eukaryotic initiation factor 4A-III.
    
 0.961
KP79_PYT20440
Regulator of nonsense transcripts 3A.
    
 0.959
KP79_PYT12771
RANBP2-like and GRIP domain-containing protein 8.
    
  0.911
KP79_PYT11014
Uncharacterized protein.
   
 
  0.907
KP79_PYT11739
Regulator of nonsense transcripts 2.
    
 0.888
KP79_PYT08830
Intron-binding protein aquarius.
    
 
 0.819
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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