STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KP79_PYT05764CCR4-NOT transcription complex subunit 6-like. (895 aa)    
Predicted Functional Partners:
KP79_PYT14047
CCR4-NOT transcription complex subunit 1.
   
 0.939
KP79_PYT12361
CCR4-NOT transcription complex subunit 7.
    
 0.932
KP79_PYT06448
CCR4-NOT transcription complex subunit 3.
    
 0.861
KP79_PYT07030
CCR4-NOT transcription complex subunit 2.
    
 0.855
KP79_PYT06970
Protein PAT1-like 1.
    
 
 0.836
KP79_PYT03554
Cell differentiation protein RCD1-like.
    
 0.768
KP79_PYT22119
ATP-dependent RNA helicase me31b; Belongs to the DEAD box helicase family.
    
 0.767
KP79_PYT01832
CCR4-NOT transcription complex subunit 4.
    
 0.763
KP79_PYT03860
Parafibromin.
   
 
 0.701
KP79_PYT00836
CCR4-NOT transcription complex subunit 11.
    
 0.697
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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