STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KP79_PYT14050Small nuclear ribonucleoprotein-associated protein B. (196 aa)    
Predicted Functional Partners:
KP79_PYT16459
Small nuclear ribonucleoprotein Sm D3.
   
 0.998
KP79_PYT10088
Small nuclear ribonucleoprotein Sm D2.
   
 0.998
KP79_PYT11570
Small nuclear ribonucleoprotein F.
   
 0.997
KP79_PYT06762
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.995
KP79_PYT07483
U7 snRNA-associated Sm-like protein LSm10.
   
 0.967
KP79_PYT16684
Uncharacterized protein.
   
 0.959
KP79_PYT17946
Uncharacterized protein.
   
 0.957
KP79_PYT19526
Splicing factor 3B subunit 1.
  
 0.950
KP79_PYT17302
U5 small nuclear ribonucleoprotein helicase.
   
 0.948
KP79_PYT21135
Splicing factor 3B subunit 4.
    
 0.945
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.