KP79_PYT09011 protein (Mizuhopecten yessoensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KP79_PYT09011

ATPase family AAA domain-containing protein 2B. (1557 aa)

Predicted Functional Partners:

KP79_PYT09158

0.808

KP79_PYT13789

0.779

KP79_PYT24321

0.776

KP79_PYT16962

0.763

KP79_PYT04184

0.758

KP79_PYT00829

0.757

KP79_PYT18916

0.755

KP79_PYT06908

0.754

KP79_PYT00781

0.746

KP79_PYT08861

0.745

Your Current Organism:

Mizuhopecten yessoensis

NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KP79_PYT00781	KP79_PYT09011	A0A210QQN7	A0A210QTE8	WD repeat-containing protein 67.	ATPase family AAA domain-containing protein 2B.	0.746
KP79_PYT00829	KP79_PYT04184	A0A210QPW7	A0A210PC51	26S proteasome non-ATPase regulatory subunit 11.	26S proteasome non-ATPase regulatory subunit 3.	0.999
KP79_PYT00829	KP79_PYT06908	A0A210QPW7	A0A210Q7K5	26S proteasome non-ATPase regulatory subunit 11.	26S proteasome non-ATPase regulatory subunit 13.	0.999
KP79_PYT00829	KP79_PYT08861	A0A210QPW7	A0A210PNP9	26S proteasome non-ATPase regulatory subunit 11.	Histone H2A deubiquitinase MYSM1.	0.928
KP79_PYT00829	KP79_PYT09011	A0A210QPW7	A0A210QTE8	26S proteasome non-ATPase regulatory subunit 11.	ATPase family AAA domain-containing protein 2B.	0.757
KP79_PYT00829	KP79_PYT16962	A0A210QPW7	A0A210R6G4	26S proteasome non-ATPase regulatory subunit 11.	26S proteasome non-ATPase regulatory subunit 4.	0.998
KP79_PYT00829	KP79_PYT18916	A0A210QPW7	A0A210QZJ7	26S proteasome non-ATPase regulatory subunit 11.	26S proteasome non-ATPase regulatory subunit 2; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S2 family.	0.999
KP79_PYT04184	KP79_PYT00829	A0A210PC51	A0A210QPW7	26S proteasome non-ATPase regulatory subunit 3.	26S proteasome non-ATPase regulatory subunit 11.	0.999
KP79_PYT04184	KP79_PYT06908	A0A210PC51	A0A210Q7K5	26S proteasome non-ATPase regulatory subunit 3.	26S proteasome non-ATPase regulatory subunit 13.	0.999
KP79_PYT04184	KP79_PYT08861	A0A210PC51	A0A210PNP9	26S proteasome non-ATPase regulatory subunit 3.	Histone H2A deubiquitinase MYSM1.	0.936
KP79_PYT04184	KP79_PYT09011	A0A210PC51	A0A210QTE8	26S proteasome non-ATPase regulatory subunit 3.	ATPase family AAA domain-containing protein 2B.	0.758
KP79_PYT04184	KP79_PYT16962	A0A210PC51	A0A210R6G4	26S proteasome non-ATPase regulatory subunit 3.	26S proteasome non-ATPase regulatory subunit 4.	0.998
KP79_PYT04184	KP79_PYT18916	A0A210PC51	A0A210QZJ7	26S proteasome non-ATPase regulatory subunit 3.	26S proteasome non-ATPase regulatory subunit 2; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S2 family.	0.999
KP79_PYT06908	KP79_PYT00829	A0A210Q7K5	A0A210QPW7	26S proteasome non-ATPase regulatory subunit 13.	26S proteasome non-ATPase regulatory subunit 11.	0.999
KP79_PYT06908	KP79_PYT04184	A0A210Q7K5	A0A210PC51	26S proteasome non-ATPase regulatory subunit 13.	26S proteasome non-ATPase regulatory subunit 3.	0.999
KP79_PYT06908	KP79_PYT08861	A0A210Q7K5	A0A210PNP9	26S proteasome non-ATPase regulatory subunit 13.	Histone H2A deubiquitinase MYSM1.	0.947
KP79_PYT06908	KP79_PYT09011	A0A210Q7K5	A0A210QTE8	26S proteasome non-ATPase regulatory subunit 13.	ATPase family AAA domain-containing protein 2B.	0.754
KP79_PYT06908	KP79_PYT16962	A0A210Q7K5	A0A210R6G4	26S proteasome non-ATPase regulatory subunit 13.	26S proteasome non-ATPase regulatory subunit 4.	0.999
KP79_PYT06908	KP79_PYT18916	A0A210Q7K5	A0A210QZJ7	26S proteasome non-ATPase regulatory subunit 13.	26S proteasome non-ATPase regulatory subunit 2; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S2 family.	0.999
KP79_PYT08861	KP79_PYT00829	A0A210PNP9	A0A210QPW7	Histone H2A deubiquitinase MYSM1.	26S proteasome non-ATPase regulatory subunit 11.	0.928