KP79_PYT06693 protein (Mizuhopecten yessoensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KP79_PYT06693

CEP209_CC5 domain-containing protein. (2511 aa)

Predicted Functional Partners:

KP79_PYT00866

0.905

KP79_PYT08964

0.739

KP79_PYT12545

0.737

KP79_PYT10006

0.734

KP79_PYT14288

0.732

KP79_PYT16825

0.708

KP79_PYT05362

0.708

KP79_PYT06829

0.704

KP79_PYT21360

0.701

KP79_PYT08741

0.694

Your Current Organism:

Mizuhopecten yessoensis

NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KP79_PYT00866	KP79_PYT05362	A0A210QNZ5	A0A210QX18	IQ calmodulin-binding motif-containing protein 1.	B9 domain-containing protein 1.	0.414
KP79_PYT00866	KP79_PYT06693	A0A210QNZ5	A0A210QTG0	IQ calmodulin-binding motif-containing protein 1.	CEP209_CC5 domain-containing protein.	0.905
KP79_PYT00866	KP79_PYT06829	A0A210QNZ5	A0A210QUU9	IQ calmodulin-binding motif-containing protein 1.	X-linked retinitis pigmentosa GTPase regulator.	0.713
KP79_PYT00866	KP79_PYT08741	A0A210QNZ5	A0A210QJT0	IQ calmodulin-binding motif-containing protein 1.	Jouberin.	0.497
KP79_PYT00866	KP79_PYT10006	A0A210QNZ5	A0A210PI40	IQ calmodulin-binding motif-containing protein 1.	Nephrocystin-1.	0.671
KP79_PYT00866	KP79_PYT14288	A0A210QNZ5	A0A210PNG1	IQ calmodulin-binding motif-containing protein 1.	Protein fantom.	0.554
KP79_PYT00866	KP79_PYT21360	A0A210QNZ5	A0A210PMI3	IQ calmodulin-binding motif-containing protein 1.	Nephrocystin-4.	0.614
KP79_PYT05362	KP79_PYT00866	A0A210QX18	A0A210QNZ5	B9 domain-containing protein 1.	IQ calmodulin-binding motif-containing protein 1.	0.414
KP79_PYT05362	KP79_PYT06693	A0A210QX18	A0A210QTG0	B9 domain-containing protein 1.	CEP209_CC5 domain-containing protein.	0.708
KP79_PYT05362	KP79_PYT08741	A0A210QX18	A0A210QJT0	B9 domain-containing protein 1.	Jouberin.	0.868
KP79_PYT05362	KP79_PYT08964	A0A210QX18	A0A210PQ36	B9 domain-containing protein 1.	Coiled-coil and C2 domain-containing protein 2A.	0.914
KP79_PYT05362	KP79_PYT10006	A0A210QX18	A0A210PI40	B9 domain-containing protein 1.	Nephrocystin-1.	0.676
KP79_PYT05362	KP79_PYT14288	A0A210QX18	A0A210PNG1	B9 domain-containing protein 1.	Protein fantom.	0.559
KP79_PYT05362	KP79_PYT16825	A0A210QX18	A0A210PUU5	B9 domain-containing protein 1.	Meckel syndrome type 1 protein.	0.921
KP79_PYT05362	KP79_PYT21360	A0A210QX18	A0A210PMI3	B9 domain-containing protein 1.	Nephrocystin-4.	0.655
KP79_PYT06693	KP79_PYT00866	A0A210QTG0	A0A210QNZ5	CEP209_CC5 domain-containing protein.	IQ calmodulin-binding motif-containing protein 1.	0.905
KP79_PYT06693	KP79_PYT05362	A0A210QTG0	A0A210QX18	CEP209_CC5 domain-containing protein.	B9 domain-containing protein 1.	0.708
KP79_PYT06693	KP79_PYT06829	A0A210QTG0	A0A210QUU9	CEP209_CC5 domain-containing protein.	X-linked retinitis pigmentosa GTPase regulator.	0.704
KP79_PYT06693	KP79_PYT08741	A0A210QTG0	A0A210QJT0	CEP209_CC5 domain-containing protein.	Jouberin.	0.694
KP79_PYT06693	KP79_PYT08964	A0A210QTG0	A0A210PQ36	CEP209_CC5 domain-containing protein.	Coiled-coil and C2 domain-containing protein 2A.	0.739