STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KP79_PYT00406Splicing factor 45. (415 aa)    
Predicted Functional Partners:
KP79_PYT17620
Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.
   
 0.990
KP79_PYT20850
U2 snRNP-associated SURP motif-containing protein.
   
 0.987
KP79_PYT08658
Calcium homeostasis endoplasmic reticulum protein.
   
 0.956
KP79_PYT08158
U2 small nuclear ribonucleoprotein A.
   
 0.940
KP79_PYT14915
SURP and G-patch domain-containing protein 1.
   
 
 0.939
KP79_PYT19526
Splicing factor 3B subunit 1.
   
 0.939
KP79_PYT20017
Splicing factor 3A subunit 1.
   
 0.882
KP79_PYT18446
Splicing factor 3A subunit 2.
    
 0.878
KP79_PYT00873
ATP-dependent RNA helicase DDX46.
   
 
 0.853
KP79_PYT07685
Splicing factor 3A subunit 3.
   
 0.847
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.