STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KP79_PYT00281Uncharacterized protein. (2849 aa)    
Predicted Functional Partners:
KP79_PYT13092
Serine/threonine-protein kinase PLK4.
    
 0.967
KP79_PYT15409
HAUS augmin-like complex subunit 6.
   
 
 0.737
KP79_PYT18398
Serine/threonine-protein kinase PLK.
    
 0.704
KP79_PYT08978
Serine/threonine-protein kinase PLK.
    
 0.704
KP79_PYT13446
DNA-directed RNA polymerase II subunit RPB3.
   
 0.640
KP79_PYT09158
Uncharacterized protein.
    
 0.633
KP79_PYT16577
FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]
    
 
 0.621
KP79_PYT18484
Protein aurora borealis.
   
 
 0.608
KP79_PYT13789
FACT complex subunit SPT16.
    
 
 0.606
KP79_PYT22119
ATP-dependent RNA helicase me31b; Belongs to the DEAD box helicase family.
   
 0.605
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.