STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KP79_PYT09577GTP-binding protein YPTC1. (227 aa)    
Predicted Functional Partners:
KP79_PYT17561
Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.
   
 0.763
KP79_PYT06781
Trafficking protein particle complex subunit 3.
   
 0.753
KP79_PYT21593
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.742
KP79_PYT08372
Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
    
 0.736
KP79_PYT10546
Uncharacterized protein.
    
 0.734
KP79_PYT12544
Trafficking protein particle complex subunit 2.
    
 0.733
KP79_PYT13795
Trafficking protein particle complex subunit 8.
    
 0.733
KP79_PYT05427
General vesicular transport factor p115.
   
 0.708
KP79_PYT13686
TBC1 domain family member 20.
    
 0.705
KP79_PYT06635
Lebercilin.
    
 0.636
Your Current Organism:
Mizuhopecten yessoensis
NCBI taxonomy Id: 6573
Other names: M. yessoensis, Patinopecten yessoensis, Patiopecten yessoensis, Yesso scallop, ezo giant scallop
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