STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CK5_02020Hypothetical protein. (247 aa)    
Predicted Functional Partners:
CK5_02030
Bacterial type II secretion system protein F domain.
 
     0.934
CK5_02060
Hypothetical protein.
 
  
 0.905
CK5_02050
Hypothetical protein.
 
  
 0.854
CK5_02090
FOG: FHA domain.
 
     0.832
CK5_02040
Holin, BlyA family.
 
     0.822
CK5_02070
Type IV leader peptidase family.
  
  
 0.635
CK5_23070
FOG: EAL domain.
  
    0.487
CK5_21860
Protein of unknown function (DUF1292).
  
     0.473
CK5_06180
Predicted glycosyl hydrolase.
  
     0.460
CK5_35370
FOG: EAL domain.
  
    0.459
Your Current Organism:
Blautia obeum
NCBI taxonomy Id: 657314
Other names: B. obeum A2-162, Blautia obeum A2-162, Ruminococcus obeum A2-162
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.