Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
CK5_03370 | CK5_04710 | ParB-like partition proteins. | Relaxase/Mobilisation nuclease domain. | 0.493 |
CK5_03370 | CK5_05030 | ParB-like partition proteins. | Sigma-70, region 4. | 0.420 |
CK5_04710 | CK5_03370 | Relaxase/Mobilisation nuclease domain. | ParB-like partition proteins. | 0.493 |
CK5_04710 | CK5_04770 | Relaxase/Mobilisation nuclease domain. | Predicted transcriptional regulators. | 0.661 |
CK5_04710 | CK5_05030 | Relaxase/Mobilisation nuclease domain. | Sigma-70, region 4. | 0.721 |
CK5_04710 | CK5_08350 | Relaxase/Mobilisation nuclease domain. | Hypothetical protein. | 0.410 |
CK5_04710 | CK5_22600 | Relaxase/Mobilisation nuclease domain. | Hypothetical protein. | 0.501 |
CK5_04710 | CK5_29220 | Relaxase/Mobilisation nuclease domain. | Hypothetical protein. | 0.745 |
CK5_04770 | CK5_04710 | Predicted transcriptional regulators. | Relaxase/Mobilisation nuclease domain. | 0.661 |
CK5_04770 | CK5_05030 | Predicted transcriptional regulators. | Sigma-70, region 4. | 0.745 |
CK5_04770 | CK5_08350 | Predicted transcriptional regulators. | Hypothetical protein. | 0.429 |
CK5_04770 | CK5_29220 | Predicted transcriptional regulators. | Hypothetical protein. | 0.592 |
CK5_05030 | CK5_03370 | Sigma-70, region 4. | ParB-like partition proteins. | 0.420 |
CK5_05030 | CK5_04710 | Sigma-70, region 4. | Relaxase/Mobilisation nuclease domain. | 0.721 |
CK5_05030 | CK5_04770 | Sigma-70, region 4. | Predicted transcriptional regulators. | 0.745 |
CK5_05030 | CK5_08350 | Sigma-70, region 4. | Hypothetical protein. | 0.417 |
CK5_05030 | CK5_22600 | Sigma-70, region 4. | Hypothetical protein. | 0.450 |
CK5_05030 | CK5_24740 | Sigma-70, region 4. | Hypothetical protein. | 0.426 |
CK5_05030 | CK5_29220 | Sigma-70, region 4. | Hypothetical protein. | 0.504 |
CK5_08350 | CK5_04710 | Hypothetical protein. | Relaxase/Mobilisation nuclease domain. | 0.410 |
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