STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yycF_1Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (229 aa)    
Predicted Functional Partners:
CK5_10480
ABC-type transport system, involved in lipoprotein release, permease component.
  
     0.735
CK5_27300
Signal transduction histidine kinase.
  
   0.706
CK5_10520
Hypothetical protein.
       0.701
CK5_20900
Signal transduction histidine kinase.
 
 
 0.681
CK5_04050
His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
   0.657
srrB
Signal transduction histidine kinase.
 
   0.631
CK5_13900
Signal transduction histidine kinase.
  
   0.627
CK5_02120
His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
   0.600
CK5_03250
Signal transduction histidine kinase.
  
   0.581
CK5_11790
Signal transduction histidine kinase.
  
   0.580
Your Current Organism:
Blautia obeum
NCBI taxonomy Id: 657314
Other names: B. obeum A2-162, Blautia obeum A2-162, Ruminococcus obeum A2-162
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.