STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CK5_11720ABC-type antimicrobial peptide transport system, ATPase component. (230 aa)    
Predicted Functional Partners:
CK5_11730
Predicted permease.
 
   0.926
macB_7-2
ABC-type antimicrobial peptide transport system, permease component.
   0.909
CK5_09350
ABC-type antimicrobial peptide transport system, permease component.
   0.905
CK5_03620
ABC-type antimicrobial peptide transport system, permease component.
  
 
 0.901
CK5_03630
ABC-type transport system, involved in lipoprotein release, permease component.
  
 
 0.901
CK5_27010
ABC-type antimicrobial peptide transport system, permease component.
  
 
 0.901
CK5_11710
Hypothetical protein.
 
 
   0.861
CK5_20190
ABC-type multidrug transport system, ATPase and permease components.
 
     
0.766
CK5_23090
ABC-type multidrug transport system, ATPase and permease components.
 
     
0.528
CK5_16920
ABC-type transport system, involved in lipoprotein release, permease component.
 
   0.525
Your Current Organism:
Blautia obeum
NCBI taxonomy Id: 657314
Other names: B. obeum A2-162, Blautia obeum A2-162, Ruminococcus obeum A2-162
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.