STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CK5_12920ABC-type xylose transport system, permease component. (150 aa)    
Predicted Functional Partners:
livH
Amino acid/amide ABC transporter membrane protein 1, HAAT family (TC 3.A.1.4.-); Belongs to the binding-protein-dependent transport system permease family.
     
 0.900
CK5_33980
Branched-chain amino acid ABC-type transport system, permease components.
     
 0.900
CK5_32860
ABC-type sugar transport system, periplasmic component.
  
   0.807
CK5_12760
ABC-type sugar transport system, periplasmic component.
 
   0.803
CK5_17680
Amino acid/amide ABC transporter substrate-binding protein, HAAT family (TC 3.A.1.4.-).
   
 
  0.800
CK5_17700
Amino acid/amide ABC transporter membrane protein 2, HAAT family (TC 3.A.1.4.-).
     
 0.800
lptB
Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family (TC 3.A.1.4.-).
     
  0.800
livF
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family (TC 3.A.1.4.-).
     
  0.800
CK5_33970
ABC-type branched-chain amino acid transport systems, periplasmic component.
   
 
  0.800
CK5_33990
ABC-type branched-chain amino acid transport system, permease component.
     
 0.800
Your Current Organism:
Blautia obeum
NCBI taxonomy Id: 657314
Other names: B. obeum A2-162, Blautia obeum A2-162, Ruminococcus obeum A2-162
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.