STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CK5_14010Agmatinase. (285 aa)    
Predicted Functional Partners:
speA_1
Arginine decarboxylase.
 
 
 0.995
CK5_14000
Spermidine synthase.
 
 
 0.995
CK5_11150
Arginine/lysine/ornithine decarboxylases.
 
 
 0.947
CK5_16800
Predicted metal-dependent enzyme.
   
    0.791
CK5_14020
Carboxynorspermidine dehydrogenase.
    
 0.763
CK5_14030
Carboxynorspermidine decarboxylase.
  
  
 0.667
CK5_17100
NADH:flavin oxidoreductases, Old Yellow Enzyme family.
   
  
 0.499
CK5_13530
Predicted amidohydrolase.
  
 0.448
Your Current Organism:
Blautia obeum
NCBI taxonomy Id: 657314
Other names: B. obeum A2-162, Blautia obeum A2-162, Ruminococcus obeum A2-162
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.