STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CK5_20430Anti-sigma F factor. (144 aa)    
Predicted Functional Partners:
CK5_20420
Anti-anti-sigma factor.
 
 
 0.997
CK5_20440
RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma-70 factor, sigma-B/F/G subfamily.
 
 
 0.990
CK5_02840
Tyrosine lyase ThiH.
   
    0.926
CK5_21250
Stage II sporulation protein E (SpoIIE).
  
  
 0.891
CK5_21070
Sporulation factor SpoIIGA.
  
  
 0.876
sigF_3
RNA polymerase, sigma subunit, RpsG/SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
  
 0.854
CK5_34940
Transcriptional regulator, AbrB family.
  
   
 0.848
CK5_10010
Sporulation initiation factor Spo0A C terminal.
  
  
 0.846
CK5_28490
Stage IV sporulation protein A.
  
  
 0.843
spo0A_2
Sporulation transcription factor Spo0A; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process.
  
  
 0.841
Your Current Organism:
Blautia obeum
NCBI taxonomy Id: 657314
Other names: B. obeum A2-162, Blautia obeum A2-162, Ruminococcus obeum A2-162
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.