STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBR_00820Hypothetical protein. (98 aa)    
Predicted Functional Partners:
RBR_00830
Hypothetical protein.
 
     0.936
RBR_00840
Hypothetical protein.
 
     0.901
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.827
RBR_13850
Phosphopantetheine attachment site.
   
 
 0.827
RBR_21000
DeoR-like helix-turn-helix domain.
 
     0.676
RBR_00680
Plasmid recombination enzyme.
  
     0.623
RBR_00810
Helix-turn-helix.
  
     0.588
RBR_20980
DNA ligase N terminus./Helix-turn-helix.
  
     0.552
RBR_00860
Plasmid mobilization system relaxase.
 
     0.549
RBR_00690
Predicted ATP-dependent serine protease.
 
     0.523
Your Current Organism:
Ruminococcus bromii
NCBI taxonomy Id: 657321
Other names: R. bromii L2-63, Ruminococcus bromii L2-63, Ruminococcus bromii str. L2-63, Ruminococcus bromii strain L2-63
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.