STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBR_11120Predicted membrane protein. (220 aa)    
Predicted Functional Partners:
RBR_11130
Protein of unknown function (DUF1393).
 
   
 0.629
RBR_03430
Hypothetical protein.
  
   
 0.563
RBR_12610
Predicted membrane protein.
  
   
 0.543
RBR_11070
Dipeptidase, putative.
 
     0.531
RBR_19030
ABC-type cobalt transport system, permease component CbiQ and related transporters.
 
   
 0.488
RBR_07050
Uncharacterized conserved protein.
      
 0.432
RBR_11110
Predicted DNA alkylation repair enzyme.
       0.417
RBR_11100
LPS biosynthesis protein.
       0.412
Your Current Organism:
Ruminococcus bromii
NCBI taxonomy Id: 657321
Other names: R. bromii L2-63, Ruminococcus bromii L2-63, Ruminococcus bromii str. L2-63, Ruminococcus bromii strain L2-63
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.