STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBR_13080Copper-(or silver)-translocating P-type ATPase. (831 aa)    
Predicted Functional Partners:
RBR_10900
Heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase.
 
 
0.999
RBR_13070
Uncharacterized protein conserved in bacteria.
 
  
 0.952
RBR_11830
ATPase, P-type (transporting), HAD superfamily, subfamily IC/heavy metal translocating P-type ATPase.
 
 
0.865
RBR_19760
Penicillinase repressor.
  
  
 0.840
RBR_12740
Heavy-metal-associated domain.
  
 
0.836
groL
Chaperonin GroL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
     
 0.767
RBR_10910
Transcriptional regulator, ArsR family.
 
  
 0.755
RBR_03840
Predicted ATPase of the PP-loop superfamily implicated in cell cycle control; Belongs to the TtcA family.
  
  
 0.751
RBR_12070
Transcriptional regulator, MerR family.
  
  
 0.638
infB
Bacterial translation initiation factor 2 (bIF-2); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
     
 0.613
Your Current Organism:
Ruminococcus bromii
NCBI taxonomy Id: 657321
Other names: R. bromii L2-63, Ruminococcus bromii L2-63, Ruminococcus bromii str. L2-63, Ruminococcus bromii strain L2-63
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.