STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBR_13750ABC-type multidrug transport system, ATPase and permease components. (582 aa)    
Predicted Functional Partners:
RBR_13760
ABC-type multidrug transport system, ATPase and permease components.
 
    
0.836
RBR_13740
Transcriptional regulators.
 
   
 0.797
ftsE
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
 
     
0.796
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.757
RBR_06820
ABC-type antimicrobial peptide transport system, ATPase component.
   
 
0.720
RBR_16680
ATPase, P-type (transporting), HAD superfamily, subfamily IC.
  
 0.710
RBR_18740
ATPase, P-type (transporting), HAD superfamily, subfamily IC.
  
 0.710
RBR_14050
Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit.
    
 0.695
RBR_20160
Plasmid segregation actin-type ATPase ParM.
   
 0.687
RBR_01600
Malonyl CoA-acyl carrier protein transacylase.
    
  0.670
Your Current Organism:
Ruminococcus bromii
NCBI taxonomy Id: 657321
Other names: R. bromii L2-63, Ruminococcus bromii L2-63, Ruminococcus bromii str. L2-63, Ruminococcus bromii strain L2-63
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.